FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62276214
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG427150.012.16025120
TCGTGTA348650.012.090778120
AGCGTCG527200.011.9824915120
GCGTCGT458100.011.456657120
GATCGGA1269100.011.289674120
GTCGTGT400400.010.753057120
CGTGTAG347450.010.74991120
AGATCGG1422600.010.392308120
ATCGGAA1183150.010.318211120
GAGCGTC643750.010.298136120
AGAGCGT705200.010.218232120
TAGATCG431400.09.771557120
AAGAGCG865400.09.735261120
TCGGAAG1163650.09.665453120
CGGAAGA1141200.09.276782120
CAGATCG413100.07.8786335120
AAGATCG622000.07.4530444120
GTGTAGG452650.07.070848120
GAAGAGC1408650.06.9911327120
GTAGGGA458900.05.953881120
Produced by FastQC (version 0.11.5)