FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59652394
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC695800.09.67393120
ATCGGAA1705800.09.53094120
AGATCGG1989000.09.389422120
GATCGGA1808400.09.275497120
CGTCTGA557000.09.208851120
TCGGAAG1640950.09.143508120
CGGAAGA1582450.09.003847120
GCACACG920800.08.684791120
ACGTCTG612800.08.664012120
CACGTCT686300.08.29558120
TAGATCG413400.08.141171120
CACACGT849550.08.127948120
GAGATCG848250.07.8079987120
CAGATCG678000.07.7688966120
AAGATCG597300.07.462611120
AGCACAC1241350.07.2395587120
GAGCACA1386200.07.2361054120
AGAGCAC1418450.07.113879120
GAAGAGC1827200.06.8653464120
AAGAGCA1794200.06.5937214120
Produced by FastQC (version 0.11.5)