FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005331371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64080081
Sequences flagged as poor quality0
Sequence length126
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA1186400.010.163776120
ACACGTC1523400.010.087077120
GCACACG1881950.010.019283120
CACACGT1746800.09.835426120
ACGTCTG1303400.09.796983120
CACGTCT1435600.09.793106120
TCGGAAG3629550.09.028707120
ATCGGAA3842150.09.009056120
GATCGGA4091550.08.804551120
CGGAAGA3410450.08.772971120
AGAGCAC2734950.08.610815120
AGCACAC2338750.08.549323120
AGATCGG4433000.08.517885120
GAGCACA2587050.08.495131120
GAAGAGC3411400.08.002113120
CAGATCG2068200.07.9923115120
TAGATCG525400.07.971387120
AAGAGCA3309600.07.8240023120
GAGATCG1488650.07.5455766120
GTCTGAA1530450.07.4654903120
Produced by FastQC (version 0.11.5)