FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005331474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34026719
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCCG1199380.3524818246507987TruSeq Adapter, Index 6 (100% over 51bp)
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAGA431450.1267974147022521No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTGA352060.10346574995961262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)