FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005331477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67109959
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG1696930.252858148818121TruSeq Adapter, Index 18 (97% over 40bp)
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTAG865460.12896148543318287No Hit
GGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTAATCG826230.12311585527864798No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC685420.1021338725598089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)