FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005331486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005331486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37887437
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA707010.18660803051945687No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC508630.1342476663174656No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG430660.11366828534746228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)