EGAF00005331488 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005331488
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47084211
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTATG	188341	0.4000088267381182	TruSeq Adapter, Index 25 (97% over 44bp)
GTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGACACGGCCG	107527	0.2283716721938911	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	87533	0.18590733101591103	No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTATGC	77749	0.16512754137475086	TruSeq Adapter, Index 25 (97% over 43bp)
GTGGAGGGGTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGA	60148	0.12774558333365724	No Hit
GTCCTAACACGTGCGCTCGTGCTCCACCTCCCCGGCGCGGCGGGCGAGACG	59916	0.12725284915573928	No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCC	58071	0.12333433812876252	No Hit
GGGGTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGACACGG	50001	0.10619483461239267	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	13295	33.188465	45
ACGTTCG	13820	29.434427	6
CGTTCGA	13835	29.369799	7
TCGTATG	31025	28.893856	45
TATCTCG	31395	28.489342	41
TCTCGTA	31895	28.092146	43
ATCTCGT	32385	27.722681	42
CAGACGT	15110	27.35322	3
GACGTTC	15120	27.156569	5
AGACGTT	15335	26.702469	4
GCAGACG	16035	25.747253	2
CTCGTAT	35030	25.609127	44
GGGTCGT	15980	25.3853	16
ATATATC	35740	25.158382	38
CGTCTGA	35785	25.149092	16
ATATCTC	36135	24.895319	40
TCGAATG	16710	24.761658	10
GATATAT	36455	24.744976	37
ACTGATA	36780	24.573803	34
TGGGTCG	16620	24.380693	15