EGAF00005331490 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005331490
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35964256
Sequences flagged as poor quality	0
Sequence length	51
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	260919	0.7254953362583116	TruSeq Adapter, Index 12 (100% over 51bp)
GTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGACACGGCCG	143903	0.4001278380400807	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	103203	0.2869599193154448	No Hit
GTGGAGGGGTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGA	67499	0.18768357115464865	No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGT	59134	0.16442436623741083	No Hit
GGCGGGTGGAGGGGTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCC	57116	0.15881323945642029	No Hit
GTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAGGAGACGCCGGCGC	56570	0.15729506541161314	No Hit
GGGGTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGACACGG	55401	0.1540446158541414	No Hit
GGGGAAGGGAGGGCGGGTGGAGGGGTCGGGAGGAACGGGGGGCGGGAAAGA	41587	0.11563425641281165	No Hit
GGAGGGGTGGCCCGGCCCCCCCACGAGGAGACGCCGGCGCGCCCCCGCGGG	40007	0.11124100551391915	No Hit
GGAGGGGTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGACA	36748	0.10217923040031747	No Hit
CCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGA	36543	0.10160921999887888	No Hit
GTCCTAACACGTGCGCTCGTGCTCCACCTCCCCGGCGCGGCGGGCGAGACG	35995	0.10008548487698453	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	31570	38.64509	43
TCTCGTA	32005	37.979015	41
GTATGCC	32435	37.544632	45
ATCTCGT	32790	37.10379	40
CGTATGC	34025	35.7828	44
CTCGTAT	34070	35.670635	42
CCTTGTA	35245	34.759743	33
TATGCCG	4015	34.63434	45
AATCTCG	36235	33.644596	39
ACCTTGT	36715	33.368027	32
CAGTCAC	37865	32.484337	27
GTCACCT	37850	32.45637	29
CGTCTGA	37785	32.404255	16
CTTGTAA	37835	32.338768	34
TTGTAAT	38300	32.0064	35
GTAATCT	38210	31.900171	37
CCAGTCA	38830	31.682747	26
TCCAGTC	39190	31.385967	25
TAATCTC	39540	30.84431	38
ACGTCTG	40685	30.07238	15