Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005331620 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20259852 |
Sequences flagged as poor quality | 0 |
Sequence length | 126 |
%GC | 29 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 55423 | 0.27356073479707554 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTAGATT | 905 | 0.0 | 35.81066 | 120 |
TCGGTGC | 145 | 3.6379788E-12 | 26.901571 | 106-107 |
AGTCTAG | 230 | 0.0 | 26.094595 | 108-109 |
TCTCGGG | 690 | 0.0 | 25.224123 | 120 |
AGTGTAA | 1635 | 0.0 | 24.593718 | 120 |
GCTCGGT | 220 | 0.0 | 24.553915 | 112-113 |
CGTAGCA | 110 | 1.4176112E-7 | 24.552643 | 108-109 |
GAGTCTA | 245 | 0.0 | 24.496967 | 108-109 |
CGGTCGC | 185 | 0.0 | 24.332708 | 112-113 |
GGCGGTC | 180 | 3.6379788E-12 | 23.341232 | 110-111 |
GTCTAGG | 200 | 0.0 | 22.507618 | 110-111 |
GTGCTCG | 160 | 4.5110937E-10 | 22.506588 | 108-109 |
TAGAGCT | 255 | 0.0 | 21.18267 | 108-109 |
TGTAGGC | 315 | 0.0 | 20.956291 | 106-107 |
CAGTGTA | 230 | 6.933624E-7 | 20.875135 | 120 |
GTAGCAT | 130 | 7.0930764E-7 | 20.775314 | 108-109 |
CTAGGGA | 225 | 3.6379788E-12 | 20.006895 | 112-113 |
CTGGTCG | 210 | 3.092282E-11 | 20.006893 | 112-113 |
CGCTGGT | 195 | 2.4556357E-10 | 20.006771 | 110-111 |
GGTGCTC | 195 | 2.4556357E-10 | 20.005857 | 108-109 |