FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005333205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80077482
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAAAA198750.028.9747871
CGAAAAT158200.027.0540561
CGAAATA121250.024.3923661
CGAAAGA158150.023.0167051
CGAAATT114150.022.172591
CGCATTA54100.021.9025081
CGAACTA49400.021.875551
CGAATTT135700.021.3408871
CGGATTA63350.021.023781
CGATATA62650.020.8804131
CGAATTA89950.020.3393571
CGAAACA150000.020.2543321
CGAAAAG191700.020.1505361
CGATAAA85900.020.0292451
CGAAAAC146100.020.0164031
CGATTAC61150.019.9199281
CGATAAT72900.019.8950481
CGCATAA52400.019.6281591
CGACTAA45500.019.5838261
CGAATAT110450.019.568171
Produced by FastQC (version 0.11.5)