EGAF00005333215 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005333215
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55483928
Sequences flagged as poor quality	0
Sequence length	101
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	34705	0.0	9.635765	94-95
AGATCGG	41775	0.0	9.369498	94-95
ATCGGAA	33175	0.0	8.755705	94-95
TAGATCG	13510	0.0	8.051665	94-95
TCGGAAG	37880	0.0	7.072529	94-95
AGCGTCG	13775	0.0	6.431212	94-95
GCGTCGT	12295	0.0	6.3940353	94-95
AAGATCG	19680	0.0	5.853184	94-95
AAGAGCG	28220	0.0	5.7735467	94-95
CGGAAGA	43330	0.0	5.6896324	94-95
AGAGCGT	23545	0.0	5.6186514	94-95
CAGATCG	21810	0.0	5.510239	94-95
CGTCGTG	12905	0.0	5.3188214	94-95
GAGCGTC	21180	0.0	5.292875	94-95
GAGATCG	25390	0.0	5.098112	94-95