FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15789841
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCG37600.09.34885394-95
GATCGGA88450.09.10303794-95
AGATCGG103500.08.58253794-95
ATCGGAA85850.08.52108594-95
AGCGTCG35300.07.26663894-95
GCGTCGT30250.07.14497194-95
TCGGAAG96850.07.13637894-95
CGTCGTG30950.06.90663294-95
AAGAGCG76350.05.59948394-95
AGAGCGT60850.05.38645494-95
CGGAAGA113800.05.342962794-95
AAGATCG51100.05.0662994-95
GAGCGTC56700.05.026696794-95
Produced by FastQC (version 0.11.5)