FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005333242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9301421
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN586270.6303015420977075No Hit
CCCGGTTTGTATTCGTACTGAAAATCAAAATCAAGTCAGCTTTTACCCTT156510.16826461247157828No Hit
GTCCCTATTAATCATTACCTCTTTGCGCAAACCAACAAAATAGCAAAAAA153490.1650177967430998No Hit
ACCCGTTAAAGCCATGGTAGGCCAATACCCTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGATCCATCGCC128270.13790366009666696No Hit
TCCCGTTACCCGTTAAAGCCATGGTAGGCCAATACCCTACCATCCAAAGC115280.12393805204602608No Hit
GCTGCCTTCCTTGGATGTGGTAGCCGTCTCTCAGGCTCCCTCTCCGAAAT113190.12169108354519165No Hit
TACCCGTTAAAGCCATGGTAGGCCAATACCCTACCATCCAAAGCTGATAG98830.10625258226673107No Hit
CCTCGTTCAAGATTAATAATTGCAATAATCTATCCCTATCACGATGCAGG96450.10369383344759904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)