Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005333253 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9698015 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 426518 | 4.397992785121492 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 15740 | 0.0 | 59.76081 | 4 |
TCTACGG | 15830 | 0.0 | 59.494762 | 5 |
CTACGGC | 15970 | 0.0 | 58.810448 | 6 |
TACGGCC | 16040 | 0.0 | 58.307056 | 7 |
ACGGCCA | 16325 | 0.0 | 57.329647 | 8 |
CGGCCAT | 16445 | 0.0 | 56.691505 | 9 |
GCCATAC | 17045 | 0.0 | 54.559666 | 11 |
CCTGGTT | 24540 | 0.0 | 53.759262 | 70 |
GGCCATA | 17435 | 0.0 | 53.72087 | 10 |
CATACCA | 17885 | 0.0 | 51.81087 | 13 |
TGTCTAC | 8195 | 0.0 | 51.255054 | 3 |
CCATACC | 18195 | 0.0 | 50.81771 | 12 |
GGTCTAC | 6255 | 0.0 | 50.75001 | 3 |
TACCACC | 20000 | 0.0 | 46.215252 | 15 |
TTTCGAC | 1125 | 0.0 | 44.75247 | 1 |
AGTCTAC | 3605 | 0.0 | 44.720913 | 3 |
ATACCAC | 21265 | 0.0 | 43.904762 | 14 |
ACCACCC | 21445 | 0.0 | 43.037415 | 16 |
AACGCGC | 19945 | 0.0 | 42.851818 | 25 |
TCGACTC | 1830 | 0.0 | 42.046658 | 3 |