FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7242368
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCC9750.012.0304783
ACCGCGC13100.011.3269681
CCGCGCC13200.010.9770072
TGGCGAC3000.00588326069.20047648
GCGCCCG10750.08.9857044
GATCGGA7857.967119E-77.47151868
CGCCCGG15400.07.3925765
CCGTGCC12908.731149E-106.68588452
AGATCGG7854.7848625E-56.59251667
ATCGGAA9351.2322691E-56.27287869
ACCGTGC12702.969864E-86.24943351
CGAGTAG9902.9681943E-55.924385567
ACCGCAC9358.235751E-55.9050681
CGTGCCC10601.3452636E-55.8583493
TCGGAAG8509.4053557E-45.682490368
CCGAGTA9850.00105258885.253933466
CCGCACC10250.0017876125.0486582
Produced by FastQC (version 0.11.5)