FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7230704
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGTG1154.6070585E-520.9999457
CGCGATC3101.0859367E-915.5801713
GCGCGAT3101.8198989E-814.4673012
CGGCCGA2454.9669197E-614.0810099
ACCGCGC13650.012.8923921
CGCGCCC10800.011.8190833
GGCGCGA4105.4738848E-811.7825731
CGCGTGC2050.003729993211.78045458
CCGCGCC14700.011.7343372
CGAGGCG5006.4519554E-911.03951235
CGTTGAC2250.007464664510.73300658
ACCGTGC13800.010.5018591
CGGATCA8050.010.28589844
GCGCCCG11850.010.1895634
GGCGGAT9200.010.12525342
GCGGATC8300.09.9762243
ACCGTAT3501.899273E-49.8588881
CGCCCGG15050.09.3983855
CCGTGCC15600.09.2881782
ACCGCAC10700.09.0296361
Produced by FastQC (version 0.11.5)