FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5734900
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCAT1350.003246639615.33227613
ACCGCGC9900.014.9873451
CCGCGCC11450.012.9556652
CGCGCCC7900.012.6639063
CGCGCCG2250.007465508810.7327813
CGCCCGG12800.09.7026265
GCGCCCG9600.09.3432694
GAGTTCG7001.2759665E-78.37901862
CGCGCCT5502.9221557E-58.1541263
TCGGCTG4300.00148209598.02375349
TGCGATC4754.4758595E-47.9890633
CTTCGAC4805.0082506E-47.90584332
GCGCCCA7453.4696131E-77.87207844
ACTGCGC9353.6689016E-97.7499541
CTGCGCC9001.4870238E-87.66627262
CTACGCC4050.00775843447.6662722
CGCCTGG13800.07.4996145
GCGGATC8705.2936593E-77.138248443
GTGCGAT4950.0058825226.96933842
GTTCGAG9301.5947771E-66.677832664
Produced by FastQC (version 0.11.5)