FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7241607
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGTCC900.005735748419.16755947
CGCGCCC10900.012.9771313
ACCGCGC13900.012.6606111
CCGCGCC14900.012.040332
GCGAGCG2100.004464606311.50029767
GATCGAG5906.002665E-1111.11045662
GCGCGAT4158.140487E-710.8072842
CGCGATC4804.1771273E-810.7813053
GCTTACG2600.001800590810.6154392
CGGATCA9950.010.40227844
ACCGCAC11750.010.2784941
ATCGAGA6756.548362E-1110.222486563
CGCAATC5755.2095857E-910.2000523
GCGGATC10950.09.45236543
AGATCGA7708.185452E-119.40887961
ACCGTGC15450.09.3803721
CGCCCGG15900.09.3301735
GCGCCCG12300.08.9755944
CCGTGCC17400.08.922462
CGAGGTC7353.2960088E-98.91859851
Produced by FastQC (version 0.11.5)