FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6277956
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCAGT2255.365906E-412.26681455
CGTAGGC2000.003100560712.0750483
CGCGATC2601.3470592E-411.9423573
ACCGCGC10750.010.593611
GCGCGAT2650.002109768810.4151362
CCGCGCC11700.09.1410632
ACTTCGC3150.0087633298.7643141
CGTTATC3150.008782788.7619464
CGCGCCC8404.5292836E-108.6250353
GGCGCGA3700.00343288098.3941991
CGCAATC4703.992525E-48.0745013
TGCGCCC7503.85744E-77.8200313
GCGCCCG10152.7830538E-107.81764134
GCGATTT4000.0069388417.762531362
CTGCGCC10303.8016879E-107.7039142
ACTGCGC10051.8608262E-97.5543151
CGCCCGG13250.07.55085335
TTCGCCA5058.6148304E-47.51488163
ACCGTGC12354.3655746E-117.2651551
ACCGCAC9302.1258711E-77.0503251
Produced by FastQC (version 0.11.5)