FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5977029
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGGCG1709.1260707E-414.20534327
CGCGCCC8200.012.6212623
ACCGCGC10750.012.5195741
CCGCGCC11400.011.8019872
GTCGATT2150.005323870611.2319442
GCGCCCG8850.09.745234
ATGCGGC2850.00385813379.683626
CGCCCGG13100.08.427025
AGATCGG5654.0872474E-57.938216769
GCGAAGA4050.0077529527.666888756
CGCGCCT5058.6200476E-47.5144413
ACCGTGC10605.4442353E-97.16226241
GATCGGA4900.00532693937.04096167
CGTGCCC8602.4460567E-56.4182543
CCGTGCC11652.4691872E-76.2185442
ATCGGAA6350.0095371025.976501568
CCCGGCC28450.05.94167857
CCGGCCT12559.904743E-75.77268938
ACCACGC17302.9631337E-95.5852851
ACCGCAC8750.00135412865.52145341
Produced by FastQC (version 0.11.5)