FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6877641
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTACGC3650.00303682758.5088221
ACCGCGC10354.1836756E-107.6684451
CCGCGCC10807.965355E-97.02761942
GATCGAG5050.00713628676.831727562
GCACGCC5100.007852036.7645044
ACCGCAC9452.069144E-66.57295271
CGCGCCC7905.2285573E-56.5504853
CGCACCC6904.8004295E-46.49985363
CGCCCGG12753.2354365E-86.2233445
TGCGATC6300.0087938496.02367353
ATCGGAA8306.945598E-45.819315468
GATCGGA7250.00588531845.71042464
AGATCGG7300.00635031245.671311466
CCGTGCC12304.239804E-65.609632
ACCACGC18655.5842975E-105.5508851
CACCCGG9200.00255550895.24984365
CCACGCC21255.511538E-105.1951772
ACCGTGC12051.030759E-45.1547221
Produced by FastQC (version 0.11.5)