FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8030067
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCGCA3450.00182517559.0000034
ACCGTGC13550.08.9135511
ACCGCGC15800.08.7362481
CGCCCGG16350.08.651385
GACTCCG10950.08.50685230
ACCGCAC10801.8189894E-128.3075241
GGGCGAC8101.8750143E-88.09234316
CCGTGCC14950.08.0769262
CGTGCCC12050.08.0166013
CCGCGCC17850.07.73109532
ACGCCCG6301.9040575E-57.66666944
CGCGCCC12751.8189894E-127.5764733
TCGAGTT6301.5765353E-47.11936167
GCGCCCG12951.3096724E-106.92664344
ACTCCGT14102.0008883E-116.85106631
ACCGTAA5050.0071207056.8333021
GCGGATC8101.0109932E-56.815029643
GATCGGA7109.216672E-56.80307469
ACTTCGA6108.445398E-46.7884941
GCGACAG8804.811296E-66.664567518
Produced by FastQC (version 0.11.5)