FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6470848
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCC8700.012.2924993
ACCGCGC11950.012.12680151
CCGCGCC12400.011.9631222
CGCAATC4156.497066E-811.6379823
AGATCGG5552.906745E-910.568109569
GCGCCCG10750.010.2692634
GCGCAAT4108.2581555E-610.0970652
ACTACGC3106.8553904E-410.0171841
CCTTCGA3552.1923987E-49.7193351
GGCGCGA3209.1739674E-49.7041471
TTCGCAG4401.9086754E-59.4086283
CGCCCGG14700.09.1526115
CGAGGCG3956.392526E-48.73408535
CGGCCTA3650.00304451248.5064319
ACCGTGC13200.08.3645171
GAGTTCG8252.5920599E-87.94598562
CGTGCCC9152.419256E-97.9176443
CACGATC8809.802534E-97.8405243
CCGTGCC13700.07.80618572
ACCACGC18250.07.7515021
Produced by FastQC (version 0.11.5)