FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8042526
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGAT902.1281197E-422.9996437
CGCGATT1056.028433E-419.7137348
ACCGCGC15550.018.8622171
CCGCGCC17050.016.9970172
CGCGCCC12200.016.6843763
CGCGATC3301.5643309E-1015.681773
GCGCCCG11850.014.2656024
CGGCCGA2304.278121E-513.4995389
GCGCGAT3601.2899545E-712.4582952
CGCCCGG16000.012.2904355
CACGCGC2902.8114462E-511.8988831
TGCGATC5855.0931703E-1111.2050943
CGCGCCT9100.010.9944723
ACTGCGC13250.010.9379921
GCGATCT8950.010.40766054
GCGCCCA10650.010.3660374
ACCGTGC14000.010.3520281
GGGCGAC8350.010.32892416
ACTACGC3753.413147E-510.1219831
ACCGCAC11900.09.8590741
Produced by FastQC (version 0.11.5)