FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6827445
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCGGT900.00573763919.16644529
ACCGCGC14500.018.3249071
CCGCGCC14550.018.257392
CGCGCCC10900.018.0409453
CGTCCGG1350.003245799815.3329325
GCGCGAT3304.1369276E-813.5906532
GCGCCCG12400.013.0762714
CGCGATC3053.4533932E-612.44238953
CGCCCGG15900.011.9336525
CGGCCTA3501.239503E-611.8281769
ACCGCAC9050.011.8204011
CGGCCGA2357.7362166E-411.7442889
GCGACAG7450.011.5767118
GCGCCCA8650.011.5661724
GGGCGAC8200.011.35929316
GGCGCGA4301.05863364E-711.2351441
ACCGTGC12350.011.1766621
CCGGCCT13300.010.8944528
CCGCACC9700.010.6699022
ACCACGC19900.010.5778121
Produced by FastQC (version 0.11.5)