FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6827445
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGATT902.1334198E-422.9911258
CCGCGAT953.0757848E-421.7810637
ACCGCGC11200.017.2928641
CCGCGCC11950.016.1694152
CGCGCCC9600.014.7307393
ACCGTGC9650.013.9776521
CGCGATC2052.450581E-413.4600913
CGGCCTA3952.3410394E-913.0959229
CGCCCGG14050.012.7640365
GCGCCCG10600.012.6887764
CCGTGCC10700.012.253892
ACCGCAC8600.012.064791
ACTGCGC8400.011.9403111
GCGCGAT2050.003726343211.7819822
CGCGCCT6109.094947E-1211.3086833
CCGGCCT12050.011.1616658
CGTGCCC8150.011.0034193
TGCGCCC5502.5156623E-910.6610043
GCGCCCA7550.010.5061074
GTTCGAT3301.04575505E-410.45870754
Produced by FastQC (version 0.11.5)