FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6559568
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCGGT1200.001480037217.2460729
GCGCGTC1503.5233508E-416.1029622
ACCGCGC9350.013.6840411
CGCGATC2557.525354E-613.5263313
CGGTCAC1800.001407353313.41350832
GGGCCGT1850.001730254613.05068357
CGCGCCC7250.012.8453493
CCGCGCC10000.012.4222872
GCGCGAT2903.705148E-410.7088672
GAATCCG3552.2004479E-49.71580157
GCGCCCG9500.09.4390194
CGCCCGG12050.08.8726185
CCGGGTT6706.324444E-88.75173834
ACCGTGC10500.08.5626531
ACCGCAC8152.237357E-98.4858751
GCGCCCA6604.700414E-78.3609034
CCGGCTA7504.4146873E-88.2767898
ACTTCGA5653.9720584E-57.95644661
GGCGCGA4400.00181826587.85907751
CCGTGCC11607.8216544E-117.4367132
Produced by FastQC (version 0.11.5)