FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8505372
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC15700.010.3301321
CGCGCCC11600.09.8146363
CGCAATC6151.5674232E-89.5365683
GGCGCAA5857.357812E-89.4378211
GCGCAAT5908.414827E-89.3559152
ACCGCAC11750.08.8103071
CCGCGCC17250.08.7999832
CGGCCTA5101.1305434E-58.7937919
CGCACCC7758.527422E-98.4580493
CGCCCGG17400.08.3275225
GCGCCCG14350.07.9337374
CCGCACC12800.07.81639152
TAGACGA4050.00775454577.666787667
GCGACAG9954.828791E-66.24101118
CCGGCCT17955.456968E-126.15037068
CGATCTT9105.5791403E-56.06588655
CTCACGC30250.06.04461673
GCGATCT11501.2862765E-65.99995374
GGGCGAC10409.895804E-65.97096716
GAGTTCG12902.655579E-75.883813462
Produced by FastQC (version 0.11.5)