FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6131948
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCCTA3804.345618E-49.0785139
ACCGTGC11900.08.6991921
AACACGC3200.0099910168.6249444
CGCGCCC8751.0095391E-98.280013
ACCGCGC10801.4551915E-117.9876841
CCGTGCC12900.07.7558232
GCGCCCG9801.1241355E-97.7447814
GGGCGAC6251.7129527E-57.72775716
CCGCGCC12103.6379788E-127.6983562
GCGGGCA5502.5865226E-47.5272239
TATACGT4150.0096450317.48169319
CGCCCGG14200.07.2886235
ACCACGC17000.06.90135861
GGCGACA7703.6619964E-56.720567717
ACTTTAC26650.06.6035521
GAGCGAG9502.266146E-66.536583424
CGCACCC6350.0013352566.51969243
ACCGCAC9552.4602814E-66.50389861
GCGATTC6550.0018946896.32056644
CCGGCCT13108.483767E-96.3204638
Produced by FastQC (version 0.11.5)