FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8800222
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGGCG1451.2666085E-519.03406127
CGGCGGT1351.5786449E-417.88859629
CGGCCGA2301.4269972E-716.4988869
CGCGATC3900.015.9221823
ACCGCGC16650.013.9077851
GCGCGAT4102.8194336E-1013.4625822
ACGATCG1850.001727928313.05309812
CGCGCCC13150.012.5924483
ACCGTGC18300.012.2760791
CCGCGCC18300.012.253342
CCGTGCC18600.012.24117852
CGAGGCG8600.012.03475635
CGCACCC8950.010.4072363
GCGCCCG14650.010.3611934
GGCGCGA5502.7666829E-810.0543661
ACCGCAC13250.09.91208651
GATCGAG8400.09.85670162
CGGATCA12350.09.77800144
CGCCCGG18000.09.774345
CGTGCCC11700.09.7302233
Produced by FastQC (version 0.11.5)