FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7234673
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAAGC2300.00870698810.51258267
ACCGACA3100.0077239498.90046438
ACCGTGC12606.91216E-117.11875771
ACCGCGC11951.1732482E-96.9285891
CCGTGCC12805.185939E-96.46745872
CGCGCCC9602.6991438E-66.467283
ATCGGAA10251.1262637E-66.403494469
CCGCGCC12753.246896E-86.22228672
GATCGGA9551.6774648E-56.148720368
GCGATCT8155.5179576E-45.92499264
GCGCCCG9953.2186905E-55.89309174
ATTTCGT7500.0084457335.526614768
AGATCGG10901.2536875E-45.387778369
ACCGCAC10253.089562E-45.38514661
CGCCCGG13704.9876035E-65.2870465
ACCACGC21102.4701876E-95.06851431
Produced by FastQC (version 0.11.5)