FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6718564
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCTAT2550.001532107410.82311938
ACCGCGC12253.45608E-117.3391041
CCGCGCC12801.0004442E-107.00744252
CGCGCCC8451.8891762E-56.53219943
GCGCCCG9904.44907E-66.27239664
CGCCCGG12458.545139E-75.81884055
AGATCGG7900.00244330965.67695867
CGCGCCT7350.0068528535.63235573
ATCGGAA8550.00620751735.245688469
Produced by FastQC (version 0.11.5)