FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10129107
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCAT850.00412286820.2936943
ACCGCGC18750.08.1120491
CGCGCCC14300.07.47886473
AGATCGG10757.2577677E-97.060491669
CCGCGCC20350.06.7811522
ACCGCAC13755.0749804E-106.5365681
GAGTTCG15102.8463546E-85.7116662
CCGCACC14253.0860247E-75.56827742
GATCGGA10557.8246405E-55.558878467
GCGCCCG13809.784126E-75.49983074
CTCGAGT7600.0099028665.44722752
GCGTGAT11404.3099284E-55.44722752
ACCGTGC19059.222276E-105.4438411
GCGACAG9950.00120599145.200639718
GCGCCCA12654.0155777E-55.1816594
AGTTCGA19551.03864295E-85.11741463
CGCCCGG21608.58563E-105.1107275
TCGAGAC21102.4738256E-95.068389466
ACCCGGC13702.7813485E-55.03611766
GCGGATC12351.5216939E-45.028284543
Produced by FastQC (version 0.11.5)