FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6782018
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGTCT1750.001136314913.7992513
CGCGCCC9200.013.1242883
ACCGCGC13150.012.6182421
CCGCGCC13450.012.3115082
GCGCGAT2601.3479152E-411.9415712
GATGCGC2150.00532515111.23161816
TCGCAAC2300.00878998610.4991257
GCGATTC8850.010.13623944
CGATTCT10950.09.76788945
TTCGCAG3905.2651034E-59.7302413
GCGCCCG10300.09.7129934
AGCGATT9650.09.65303743
TCAAGCG12600.09.58380240
ACTTCGC3400.00156922869.1505451
TGCGATC5201.4445366E-58.6245323
CGCCCGG12350.08.3798655
AAGCGAT15450.08.26229742
CAAGCGA14850.08.13171141
GGCGCGA3900.0054316287.9773991
ACCGTGC12901.8189894E-127.5032891
Produced by FastQC (version 0.11.5)