FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6782018
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGACGA500.007702369727.62578453
CGCACGC1950.00256912512.3818353
ACCGCGC11000.011.603481
ACTACCG2409.159244E-411.51014851
CCGCGCC12050.010.5912952
CGCGCCC8850.010.1333173
GCGCGAT3501.906367E-49.8552212
GGCGCGA4552.8366585E-59.0980651
ACCGTGC11050.08.42909051
CGCCCGG12300.08.132085
GCGCCCG8657.1449904E-97.9749114
CCGTGCC11153.274181E-117.73391772
CGTGCCC8252.1928281E-77.5255833
GTGCCCG7807.229628E-77.5173774
ACTGCGC9503.0999036E-76.8993671
CCGGCCT12504.3291948E-106.8979428
GCGCCCA7854.802674E-56.5907314
TGCGCCC6050.00579159436.2713193
AGATCGG8651.7914016E-45.989928267
GGCGAAA6350.0095704475.97450839
Produced by FastQC (version 0.11.5)