FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7377600
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGCCG1400.004139134714.7827717
ACCGCGC13400.013.6456731
CGCGCCC9550.013.3639213
CCGCGCC14100.012.7211292
GCGCGTC2852.361769E-512.1030992
CGCCCGG13700.011.5815565
CGCGTCT3003.991407E-511.4977883
CGCGATC3359.848407E-611.32617953
AGCGTCG3501.5728307E-510.85799369
GCGCGAT3259.01104E-510.6134862
CGGCCTA3652.5480289E-510.3941349
GCGCCCG9700.09.6012454
ACGCCCG5959.6088115E-89.2755274
ACCACGC21050.08.8504531
CTAACGA3550.00237027448.7447963
ACTTCGC4351.7309672E-48.7242341
GGCGCGA4058.1957446E-48.5186121
ACCGCAC10304.5474735E-118.0389231
CGCAATC5603.6679216E-58.0073883
GCGCCCA8605.4307748E-87.62062744
Produced by FastQC (version 0.11.5)