FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6931220
Sequences flagged as poor quality0
Sequence length75
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGT2300.00871079410.51195166
GATCGGA9550.09.40472169
AGATCGG10850.08.91336168
TCGGAAG8706.5037966E-87.5430668
ATCGGAA9503.947389E-87.271425267
CGGAAGA10151.7538696E-87.14708969
TCGCTCT13602.4578914E-55.072232211
CGCTCTG12351.5273048E-45.02701812
Produced by FastQC (version 0.11.5)