FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6778463
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTCGG450.004623887630.66718933
TAGATCG3500.00207986528.8715869
CCCGTGC4000.0069427617.762059753
CACGGAC4750.00393858657.26290766
AGATCGG8401.2185838E-46.16081969
GATCGGA8250.00407988075.436375663
TCGGAAG8350.0047012465.37134969
ATCGGAA8450.00540734735.307782669
Produced by FastQC (version 0.11.5)