FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8853878
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGCGCT2152.2681172E-514.44059810
CGGGCTA2751.0794665E-613.80019625
ACCGCGC16100.012.880751
CGCGCCC11700.012.6787353
CGTAACC1950.00256604912.38388261
CCGCGCC17850.010.8228882
GCGCCCG12600.09.0351794
CGAGGCG6901.0608346E-88.99982335
TATGCCG3450.00182620378.99946761
TATCGGT3150.0087850788.76173237
ACTGCGC13950.08.6718071
ACCGCAC12700.08.4367221
GCGCGAT4200.00117620638.2137992
CGGATCA8555.7207217E-98.07079144
ACCGTGC15450.08.0535961
GCGACAG8202.3339453E-87.993247518
CGCCCGG16900.07.9608425
CTGCGCC13050.07.93056442
GGGCGAC9607.403287E-107.90560316
TTTATCG4855.5956695E-47.824587335
Produced by FastQC (version 0.11.5)