FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6602444
Sequences flagged as poor quality0
Sequence length75
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAACGG1800.001407351813.41351313
GCGTCGT3408.7320586E-712.17628464
CGTCGTG3652.0219886E-611.35717865
GCACCGA2300.00880029610.49745429
AGCGTCG4201.1816649E-49.03619263
TATCACG3800.00437475938.17160860
TCGTGTA4906.15722E-47.754943468
GATCGGA10807.745257E-97.0374869
GTCGTGT5150.0085176466.70771766
AGATCGG12701.9101208E-75.98412968
AGAGCGT7200.00544765135.7503961
Produced by FastQC (version 0.11.5)