FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8055578
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGCGA900.00567668719.201961
ACCGCGC15350.011.9339871
GCGCGGG2300.00879079710.49902813
CCGCGCC17250.010.3994252
CGCGATC4754.1876956E-710.1679843
GCGCGAT4452.1817003E-59.30285552
CGCGCCC12400.09.1810583
TTCGACC4906.810984E-69.15300936
GGCGCAA6201.7518141E-78.919621
CGCCCGG17600.08.8203155
ACTTCGC4250.00129759388.1325951
GCGCCCG13950.07.66629034
TAGATCG4050.0077598187.666195467
CGCAATC5552.872402E-47.4591393
GATCGAG7009.633717E-67.39263262
CTTCGAC5653.5255606E-47.32748335
ACCGCAC10403.597961E-97.31151531
ACCGTGC14200.07.30215361
CGGATCA10807.954441E-97.028174444
GCGTGAT9452.8266004E-76.9361242
Produced by FastQC (version 0.11.5)