FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7141423
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGTG1200.001478343717.2490557
CGGCGGT1350.00324568815.33302629
TGCGGCG1657.278811E-414.63617227
CGCGATC4651.0913936E-1113.3546653
GCGCGAT4153.4197E-1013.301032
ACCGCGC14250.013.0953351
CCGCGCC14800.013.0538832
CGCGCCC10700.012.8970283
CGAGGCG5950.012.176311535
TACGATC2000.003101030612.07484153
TGCGATC7050.011.7445283
GGCGCGA5502.0372681E-1011.30960751
GGTGCGA7400.011.2077191
CGCCCGG16150.011.107675
CGGATCA9800.010.91358144
GCGATCT11650.010.660734
GTGCGAT8150.010.5826842
CGGGCGG5653.9035513E-910.38061340
GCGGATC10450.010.23438743
CGGCCTA4057.136823E-610.2215879
Produced by FastQC (version 0.11.5)