FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5280192
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTCT4800.00435677787.1880112
CGTCGTG7007.666473E-56.899248669
AGATCGG16503.6379788E-126.481051468
GATCGGA16201.4551915E-116.38819369
GCGTCGT7400.00111917736.060094468
AGCGTCG7750.00194594565.786466669
AAGATCG8550.00101483535.64850869
ATCGGAA15505.0293238E-85.563910569
GTCGTGT7500.0085668685.51939969
Produced by FastQC (version 0.11.5)