FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5472198
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2551.1245461E-412.175755546
TGCCGTC3652.054987E-611.341848
CGTATGC2800.0033326539.856564544
TCGTATG3209.1865216E-49.70264443
CTCGTAT2900.00445325869.5167742
TATCTCG3000.00588998859.19912439
ATGCCGT3804.3459024E-49.07841547
GCCGTCT4150.0096462567.481557449
CAGCCCG7950.00263446315.641023625
AGACGCT10202.88392E-45.411211
GATCGGA13107.1314884E-55.004026469
Produced by FastQC (version 0.11.5)