FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4654027
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA809.574569E-525.87237746
TCGGGTA1300.002520627315.9255737
GCGCTGG4100.0086608227.57240344
CGGAGTC5650.0028287296.71627769
AGAGCGT7451.7318947E-46.481658568
GATCGGA10802.8283303E-66.067981266
AGATCGG10851.9619234E-55.72224569
TCGGAAG9801.6311803E-45.631295768
CGGAAGA9850.00105568845.252653669
ATCGGAA11352.3528203E-45.165877367
Produced by FastQC (version 0.11.5)