FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3858621
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCG2502.4771096E-510.42078292-93
GATCGGA6454.0490704E-97.71093894-95
AGATCGG7253.8451617E-86.86007694-95
TCGGAAG7252.7827627E-76.53340694-95
ATCGGAA7708.2315455E-76.15158392-93
CGGAAGA7901.301969E-65.99584794-95
CACGTGA6250.00224103945.30512544-45
Produced by FastQC (version 0.11.5)