FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3219757
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTGCG500.0074823127.78992761
ACCGCGC3301.5414244E-613.3694381
CCGCGCC3756.5578297E-611.7471992
CGCGCCC3350.00427565079.5635263
ACTAGGT7550.0085498215.520233625
Produced by FastQC (version 0.11.5)