FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3633451
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC3900.020.6667581
ACTACGC1401.8493769E-417.5218141
CCGCGCC4550.015.3864052
CGCGCCT2101.5827114E-515.00071053
ATAACGG1850.001548470913.24423548
CGCGCCC3358.367226E-611.4930823
ACCGCAC3702.4824327E-510.4183761
ACTGCGC4107.663189E-59.4019491
CGCCCGG4301.3062486E-48.953055
GCGCCCG4401.6767462E-48.7495724
ACCGTGC5108.984947E-58.245561
GCCCGGC8151.4045145E-77.7277696
CTGCGCC4600.00249577627.60957962
CCCGGCC10007.969902E-86.99773077
CCGTGCC7107.620871E-56.9022112
GCTTTAC14207.1654613E-65.1825091
Produced by FastQC (version 0.11.5)