FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3633451
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATTGC1350.002919384315.57853211
ACCGCGC4500.014.8006281
GTGCCCG3551.2188866E-611.8442134
CCGCGCC6250.011.7781832
ACCGCAG2100.00396391211.6847061
ACGGGTG2150.00480000211.38892645
GGCACCG2350.00929668310.41979846
ACCGTGC4401.579174E-59.5602131
CGTGCCC5401.9472336E-69.0842183
GCCCGTG3600.0023299358.76111110
CGCGCCC4854.9998132E-58.6694763
CCGTGCC6101.0802651E-68.6198642
CCGGCCT4653.0066178E-48.2897418
TGCCCGG5754.190584E-57.92210875
CCCGGCC10706.0936145E-107.5326067
GCCCGGC9402.4851033E-87.4559566
Produced by FastQC (version 0.11.5)