FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5520354
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGATA500.00773645627.60070816
GTCGCCG1400.004135271514.78475344
CCGAACA3150.0087894178.76109864
TAGATCG6805.237065E-57.102286369
CGTGTAG7502.5391228E-56.89936469
GCGTCGT6703.357676E-46.693413365
AGAGCGT11903.6794881E-76.08767469
CGTCGTG7450.00121311656.019579466
AGCGTCG7550.00142345145.9398564
TCGTGTA7850.00226762055.71264268
GTCGTGT8900.00168638415.426318667
Produced by FastQC (version 0.11.5)